Commits · e3fe36a325641b84a02536e5338818854335d17f · CCD-public / Nanopore

Aug 13, 2025
- fix: few parameters in modkit and identation · e3fe36a3
  João Henrique Chrusciel authored Aug 13, 2025
  
  e3fe36a3
Aug 10, 2025
- Merge branch 'main' into dev/nxtcfg · a8d565ad
  João Henrique Chrusciel authored Aug 10, 2025
  
  a8d565ad
Aug 09, 2025
- Merge branch 'cont-soft' into 'main' · 62f4b239
  Carlos Gomes authored Aug 09, 2025
  62f4b239
- up: pycoqc repo · 26cce0e0
  Carlos Gomes authored Aug 09, 2025
  
  26cce0e0
- up: image version · f69a508f
  Carlos Gomes authored Aug 09, 2025
  
  f69a508f
- fix: incorrect char escaping in exports · f1d01769
  Carlos Gomes authored Aug 09, 2025
  
  f1d01769
- fix: export modkit · dfcd6ac9
  Carlos Gomes authored Aug 09, 2025
  
  dfcd6ac9
- fix: pycoqc and plotly version issues · e416a02e
  Carlos Gomes authored Aug 09, 2025
  
  e416a02e
- up: add version env vars for other apps · e422d172
  Carlos Gomes authored Aug 09, 2025
  
  e422d172
- up: support build arg file for app versions · bb2a2aad
  Carlos Gomes authored Aug 09, 2025
  
  bb2a2aad
Aug 08, 2025
- fixed the way shell variables were set · 17154619
  João Henrique Chrusciel authored Aug 08, 2025
  
  17154619
- fix #18 · 004286a5
  João Henrique Chrusciel authored Aug 08, 2025
  004286a5
Jul 24, 2025
- Merge branch 'simplify-redundancy' into 'main' · 28b60f1b
  Carlos Gomes authored Jul 24, 2025
  28b60f1b
Jul 23, 2025
- Merge branch 'main' into 'simplify-redundancy' · 0832f5a4
  Nicolas Cendron authored Jul 23, 2025
  0832f5a4
- Fix incorrect if-else call · 36b1d038
  Nicolas Cendron authored Jul 23, 2025
  36b1d038
Jul 21, 2025
- Merge branch 'dev/optm-sam-modkit' into 'main' · 3c523e2d
  Carlos Gomes authored Jul 21, 2025
  3c523e2d
- fix: shorten pod5 threads param · ab9adbef
  Carlos Gomes authored Jul 21, 2025
  
  ab9adbef
- fix: isize init and usage · 15aabcb1
  Carlos Gomes authored Jul 21, 2025
  
  15aabcb1
- fix: samtools threads option · 396542e5
  Carlos Gomes authored Jul 21, 2025
  
  396542e5
Jul 18, 2025
- Merge branch 'main' into dev/nxtcfg · ae2aa250
  João Henrique Chrusciel authored Jul 18, 2025
  
  ae2aa250
Jul 17, 2025
- [#15 ] Simplify redundancy · 978738e4
  Nicolas Cendron authored Jul 17, 2025
  978738e4
Jul 15, 2025
- Merge branch 'dev/work' into 'main' · 4b18e4fd
  Carlos Gomes authored Jul 15, 2025
  4b18e4fd
- up: set cleanup to true in config · 1a7f3313
  Carlos Gomes authored Jul 15, 2025
  
  1a7f3313
- up: modkit parameters to improve modification data analysis · 06fd924e
  João Henrique Chrusciel authored Jul 15, 2025
  06fd924e
Jul 14, 2025
- up: clean-up procedure · 7b87f64b
  Carlos Gomes authored Jul 14, 2025
  
  7b87f64b
- fix: typo toc · aad5864f
  Carlos Gomes authored Jul 14, 2025
  
  aad5864f
Jul 12, 2025
- Merge branch 'main' into 'dev/optm-sam-modkit' · 79b0497e
  Carlos Gomes authored Jul 12, 2025
  79b0497e
- Merge branch 'dev/profiles' into 'main' · 4ffe9a9e
  Carlos Gomes authored Jul 12, 2025
  4ffe9a9e
- fix: slurm example using profiles insead of params-file · 8014695c
  Carlos Gomes authored Jul 12, 2025
  
  8014695c
- Merge branch 'main' into dev/profiles · e95e974d
  Carlos Gomes authored Jul 12, 2025
  
  e95e974d
- Merge branch 'main' into 'dev/optm-sam-modkit' · 633455f6
  Carlos Gomes authored Jul 12, 2025
  633455f6
- Merge branch 'dev/modkit-zip' into 'main' · e66c0d96
  Carlos Gomes authored Jul 12, 2025
  e66c0d96
- Merge branch 'dev/slurm-doc' into 'main' · 79eac2c3
  Carlos Gomes authored Jul 12, 2025
  79eac2c3
Jul 11, 2025
- up: add new optim parameters to the docs · 0fae03c1
  Carlos Gomes authored Jul 11, 2025
  
  0fae03c1
- up: samtools_threads is always used · 7b56be02
  Carlos Gomes authored Jul 11, 2025
  
  7b56be02
- up: support modkit optimization params in modkit step · 4b9e639c
  Carlos Gomes authored Jul 11, 2025
  
  4b9e639c
- up: support samtools threads in qc and modkit steps · ea570524
  Carlos Gomes authored Jul 11, 2025
  
  ea570524
- up: support samtools and fast5pod5 threads params in basecalling · 5d8f4252
  Carlos Gomes authored Jul 11, 2025
  
  5d8f4252
- up: params-file usage · 932e65f8
  Carlos Gomes authored Jul 11, 2025
  
  932e65f8
- up: mv human blood parameters to yaml files · 4c3fd222
  Carlos Gomes authored Jul 11, 2025
  
  4c3fd222