Commits · 17f1978ed95d3c2c829e1473987e4ea92c016988 · CCD-public / Nanopore · GitLab

Jun 20, 2025
- Merge branch 'dev/pipeline-mods' into 'main' · 17f1978e
  Carlos Gomes authored Jun 20, 2025
  17f1978e
- up: README.md and basecall.nf · bd18ebaa
  João Henrique Chrusciel authored Jun 20, 2025
  bd18ebaa
Jun 08, 2025
- fixed GPU access issue by adding --nvccli · 7498e42e
  João Henrique Chrusciel authored Jun 08, 2025
  
  7498e42e
Jun 07, 2025
- updated dorado to v1.0.1 · 6fad5285
  João Henrique Chrusciel authored Jun 07, 2025
  
  6fad5285
- fixed conventions in BASECALL and BASECALL_DEMUX processes · fea14747
  João Henrique Chrusciel authored Jun 07, 2025
  fea14747
May 27, 2025
- up: basecalling.nf code optmization · 82745392
  João Henrique Chrusciel authored May 27, 2025
  82745392
May 26, 2025
- Merge branch 'fix/strict-syntax' into 'main' · 38391d50
  Carlos Gomes authored May 26, 2025
  38391d50
May 23, 2025
- fix: local basecall_compute not used · 673e24b9
  Carlos Gomes authored May 23, 2025
  
  673e24b9
- up: dsl2 enable no longer required · 4fc67c04
  Carlos Gomes authored May 23, 2025
  
  4fc67c04
- up: simplify params; fix spacing and comments · 8b822ad9
  Carlos Gomes authored May 23, 2025
  
  8b822ad9
- fix: strict syntax format · 902710fc
  Carlos Gomes authored May 23, 2025
  
  902710fc
May 22, 2025
- fix: redundant pipelines · 40808ce4
  Carlos Gomes authored May 22, 2025
  
  40808ce4
- Merge branch 'pipeline' into 'main' · 534d40f8
  Carlos Gomes authored May 22, 2025
  534d40f8
May 21, 2025
- Merge branch 'organização' into 'main' · 4e964763
  Carlos Gomes authored May 21, 2025
  4e964763
- Typographical error correction .src/ to ./src/ · f3d78e0d
  Gabriela Federhen de Carvalho authored May 21, 2025
  
  f3d78e0d
- Path change nextflow .src/main.nf · 02cb1c42
  Gabriela Federhen de Carvalho authored May 21, 2025
  
  02cb1c42
- Adding the missing calls in the pipeline. · 91758221
  Gabriela Federhen de Carvalho authored May 21, 2025
  
  91758221
- Adding the missing calls in the pipeline. · 91eaf074
  Gabriela Federhen de Carvalho authored May 21, 2025
  
  91eaf074
May 20, 2025
- Modified project structure · eee19852
  Gabriela Federhen de Carvalho authored May 20, 2025
  
  eee19852
May 19, 2025
- Rename files Nanopore.drawio + Nanopore.drawio.png · 5809b685
  Gabriela Federhen de Carvalho authored May 19, 2025
  
  5809b685
- mv: moved nextflow to src dir · 283ea059
  Gabriela Federhen de Carvalho authored May 19, 2025
  
  283ea059
May 15, 2025
- Merge branch 'dev/containers' into 'main' · dc075a15
  Carlos Gomes authored May 15, 2025
  dc075a15
- Add PDF file ResumoCodigo.pdf · f6c138a3
  Gabriela Federhen de Carvalho authored May 15, 2025
  
  f6c138a3
- Add Nanopore.drawio · c1aee219
  Gabriela Federhen de Carvalho authored May 15, 2025
  
  c1aee219
- Fix: change name of the merge requests dir · f3b9e22d
  Gabriela Federhen de Carvalho authored May 15, 2025
  
  f3b9e22d
- Adds pipeline imagem.png · b0282a0c
  Gabriela Federhen de Carvalho authored May 15, 2025
  
  b0282a0c
May 08, 2025
- up: dorado, modkit, multiQC and pycoQC (duceppemo fork); fix: container... · 68f9c5a0
  João Henrique Chrusciel authored May 03, 2025
  68f9c5a0
Apr 25, 2025
- Merge branch 'fix/style' into 'main' · 08a45a72
  Carlos Gomes authored Apr 25, 2025
  08a45a72
- Merge branch 'main' into 'fix/style' · b14c3f6f
  Carlos Gomes authored Apr 25, 2025
  b14c3f6f
- fix: module flows and script, fix indent and spacing · 1dfebfb2
  Carlos Gomes authored Apr 25, 2025
  
  1dfebfb2
- fix: subflows indent and spacing · 1ff43043
  Carlos Gomes authored Apr 25, 2025
  
  1ff43043
- fix: nextflow line breaks and comments · cbeac104
  Carlos Gomes authored Apr 25, 2025
  
  cbeac104
- fix: nextflow indents and line breaks · c15c34c3
  Carlos Gomes authored Apr 25, 2025
  
  c15c34c3
Apr 24, 2025
- up: style fix · 87d1f3a0
  Gabriela Federhen de Carvalho authored Apr 24, 2025
  87d1f3a0
Apr 17, 2025
- up: doc and container definition · 75ede467
  Carlos Gomes authored Apr 17, 2025
  75ede467
- up: ignore IDEs · 87d310dc
  Carlos Gomes authored Apr 17, 2025
  
  87d310dc
- up: make .gz ignore .fa.gz as well · d58ee0c1
  Carlos Gomes authored Apr 17, 2025
  
  d58ee0c1
- fix: export apptainer cache dir · 447e925f
  Carlos Gomes authored Apr 17, 2025
  
  447e925f
- Merge branch 'fix/doc' into 'main' · 1cb5565b
  Carlos Gomes authored Apr 17, 2025
  1cb5565b
- Merge branch 'fix/ignores' into 'main' · dd7170a2
  Carlos Gomes authored Apr 17, 2025
  dd7170a2