up: dorado, modkit, multiQC and pycoQC (duceppemo fork); fix: container...

up: dorado, modkit, multiQC and pycoQC (duceppemo fork); fix: container definitions to reduce image size;

removed miniconda and replaced installs with apt/pip
installed samtools, bedtools via apt; pod5 and multiQC via pip
used pip options:
 `--no-cache-dir` to reduce image size
 `--break-system-packages` to bypass debian PEP 668 issue
updated timezone to Sao_Paulo
fixed plotly version conflict between pycoQC and MultiQC:
  edited pycoQC's `setup.py` inside container using:
   `sed -i 's/plotly==5.16.1/plotly==5.18.0/' setup.py`