Commits · cb68d2672d98cd2efbaffa35b279a942112a9734 · CCD-public / PycoQC

Jan 09, 2020
- Style cleanup · cb68d267
  a-slide authored Jan 09, 2020
  
  cb68d267
- can create outdir if they do not exist yet · 476cd91b
  a-slide authored Jan 09, 2020
  
  476cd91b
Nov 07, 2019
- Bump up version num · 37bdaf2c
  a-slide authored Nov 07, 2019
  
  37bdaf2c
- Codacity style and security update · 3dd9953e
  a-slide authored Nov 07, 2019
  
  3dd9953e
- Bump up version num · 80af626b
  a-slide authored Nov 07, 2019
  
  80af626b
- Update doc and tests · 3c870958
  a-slide authored Nov 07, 2019
  
  3c870958
- Update summary table functions and split into 3 Run, Basecall and align · 960535e4
  a-slide authored Nov 07, 2019
  
  960535e4
Oct 26, 2019
- Bump up version number · 0eed314b
  a-slide authored Oct 26, 2019
  
  0eed314b
- Update doc · 2b18f772
  a-slide authored Oct 26, 2019
  
  2b18f772
- Reformat over time functions + add alignment len and identity over time · e096d42e
  a-slide authored Oct 26, 2019
  
  e096d42e
- Remove results data · 7da13466
  a-slide authored Oct 26, 2019
  
  7da13466
Oct 11, 2019
- Bump up version number · fc69d5bd
  a-slide authored Oct 12, 2019
  
  fc69d5bd
- Add len pass filter · c544274b
  a-slide authored Oct 12, 2019
  
  c544274b
- Update pycoQC usage to include BAM info · 2fc24dcb
  a-slide authored Oct 12, 2019
  
  2fc24dcb
- Fix broken links · 53b3c565
  a-slide authored Oct 12, 2019
  
  53b3c565
- Update notebooks and output reports · 4c5c74b8
  a-slide authored Oct 12, 2019
  
  4c5c74b8
- Add min_pass_len option to specify a minimal read length to be "pass" · f971b805
  a-slide authored Oct 11, 2019
  
  f971b805
Oct 10, 2019
- Bump up version number · cf6922cc
  a-slide authored Oct 10, 2019
  
  cf6922cc
- Fix broken paths · 5bf6b411
  a-slide authored Oct 10, 2019
  
  5bf6b411
- Bump up version number · ab91d0ec
  a-slide authored Oct 10, 2019
  
  ab91d0ec
- file name list now contain absolute paths · 53faecd1
  a-slide authored Oct 10, 2019
  
  53faecd1
- Fix synthax error in Fast5_to_seq_summary · 6ceda601
  a-slide authored Oct 10, 2019
  
  6ceda601
- Change align_score for identity frequency · 1bbb66e9
  a-slide authored Oct 10, 2019
  
  1bbb66e9
- Update doc and add changelog · 436db111
  a-slide authored Oct 10, 2019
  
  436db111
- Update ignore rules · e5cec9e3
  a-slide authored Oct 10, 2019
  
  e5cec9e3
Oct 08, 2019
- Add dev support for poreplex and bump up version number · 4ed88dba
  a-slide authored Oct 08, 2019
  
  4ed88dba
Oct 02, 2019
- Bump up version number · b4183f2d
  a-slide authored Oct 03, 2019
  
  b4183f2d
- Quickfix for coverage error with odd number of Chrom · dc1aad9d
  a-slide authored Oct 03, 2019
  
  dc1aad9d
Oct 01, 2019
- Bump up version · fd05666d
  a-slide authored Oct 01, 2019
  
  fd05666d
- Fix typo in alignment_coverage · 96c24d42
  a-slide authored Oct 01, 2019
  
  96c24d42
- Bump up version number · 50ae2c5e
  a-slide authored Oct 01, 2019
  
  50ae2c5e
- Improve json report · 354804f4
  a-slide authored Oct 01, 2019
  
  354804f4
- typo in summary_stats_dict · 80400048
  a-slide authored Oct 01, 2019
  
  80400048
Sep 29, 2019
- Fix hardcoded reference number · a9ecda1f
  a-slide authored Sep 29, 2019
  
  a9ecda1f
- Bump up version number · 95bcebc4
  a-slide authored Sep 29, 2019
  
  95bcebc4
- Fix bug with high bases count values in alignment_rate · 4bd8fbff
  a-slide authored Sep 29, 2019
  
  4bd8fbff
Sep 27, 2019
- Fix also preventively the MD tag method And bump up version · 75dd90e8
  a-slide authored Sep 27, 2019
  
  75dd90e8
- Avoid error is NM=0 and bump up version number · c4af5369
  a-slide authored Sep 27, 2019
  
  c4af5369
- Bump up version number · 5d21854d
  a-slide authored Sep 27, 2019
  
  5d21854d
- Oups broken link · cc2b19bc
  a-slide authored Sep 27, 2019
  
  cc2b19bc