Commits · 436db11177f2a3e0042446b5673530f8b73a9888 · CCD-public / PycoQC

Oct 10, 2019
- Update doc and add changelog · 436db111
  a-slide authored Oct 10, 2019
  
  436db111
- Update ignore rules · e5cec9e3
  a-slide authored Oct 10, 2019
  
  e5cec9e3
Oct 08, 2019
- Add dev support for poreplex and bump up version number · 4ed88dba
  a-slide authored Oct 08, 2019
  
  4ed88dba
Oct 02, 2019
- Bump up version number · b4183f2d
  a-slide authored Oct 03, 2019
  
  b4183f2d
- Quickfix for coverage error with odd number of Chrom · dc1aad9d
  a-slide authored Oct 03, 2019
  
  dc1aad9d
Oct 01, 2019
- Bump up version · fd05666d
  a-slide authored Oct 01, 2019
  
  fd05666d
- Fix typo in alignment_coverage · 96c24d42
  a-slide authored Oct 01, 2019
  
  96c24d42
- Bump up version number · 50ae2c5e
  a-slide authored Oct 01, 2019
  
  50ae2c5e
- Improve json report · 354804f4
  a-slide authored Oct 01, 2019
  
  354804f4
- typo in summary_stats_dict · 80400048
  a-slide authored Oct 01, 2019
  
  80400048
Sep 29, 2019
- Fix hardcoded reference number · a9ecda1f
  a-slide authored Sep 29, 2019
  
  a9ecda1f
- Bump up version number · 95bcebc4
  a-slide authored Sep 29, 2019
  
  95bcebc4
- Fix bug with high bases count values in alignment_rate · 4bd8fbff
  a-slide authored Sep 29, 2019
  
  4bd8fbff
Sep 27, 2019
- Fix also preventively the MD tag method And bump up version · 75dd90e8
  a-slide authored Sep 27, 2019
  
  75dd90e8
- Avoid error is NM=0 and bump up version number · c4af5369
  a-slide authored Sep 27, 2019
  
  c4af5369
- Bump up version number · 5d21854d
  a-slide authored Sep 27, 2019
  
  5d21854d
- Oups broken link · cc2b19bc
  a-slide authored Sep 27, 2019
  
  cc2b19bc
- Fix dependency synthax issue and Bump up version... again · 3e3c8026
  a-slide authored Sep 27, 2019
  
  3e3c8026
- Fix dependency synthax issue and Bump up version · b766698c
  a-slide authored Sep 27, 2019
  
  b766698c
- Fix links and documentation errors + bump up version number · de62000e
  a-slide authored Sep 27, 2019
  
  de62000e
- Merge pull request #88 from a-slide/dev · 9360b499
  Adrien Leger authored Sep 27, 2019
  9360b499
Sep 26, 2019
- Merge pull request #87 from a-slide/bam · 5f1acfa6
  Adrien Leger authored Sep 26, 2019
  5f1acfa6
- Bump up version number · bc2dd779
  a-slide authored Sep 26, 2019
  
  bc2dd779
- Update readme · e49976d6
  a-slide authored Sep 26, 2019
  
  e49976d6
- Update mkdocs · d83b99fd
  a-slide authored Sep 26, 2019
  
  d83b99fd
- Update all notebooks · 3c50f310
  a-slide authored Sep 26, 2019
  
  3c50f310
- Add file list to report and update tittle customization synthax · e70109b5
  a-slide authored Sep 26, 2019
  
  e70109b5
- Add new plots to config file and simplify options · 7e665bb5
  a-slide authored Sep 26, 2019
  
  7e665bb5
- Add 8 new plotting methods for bam files · f3eddd0b
  a-slide authored Sep 26, 2019
  
  f3eddd0b
- Update way to compute alignment score and mismatches · cb44959e
  a-slide authored Sep 26, 2019
  
  cb44959e
- Add new figures · bedc1f02
  a-slide authored Sep 26, 2019
  
  bedc1f02
- Reorganise data and results folder · 99903c0c
  a-slide authored Sep 26, 2019
  
  99903c0c
Sep 23, 2019
- Remove dataframe deep copy which duplicates the data needed · c61b633b
  a-slide authored Sep 23, 2019
  
  c61b633b
Sep 21, 2019
- fix error in main · 9509a1c1
  a-slide authored Sep 22, 2019
  
  9509a1c1
- Add first full bam support · c025d521
  a-slide authored Sep 22, 2019
  
  c025d521
- Changes for Barcode_split · 451020dc
  a-slide authored Sep 22, 2019
  
  451020dc
Sep 16, 2019
- Add pysam dependency · 0717f04e
  a-slide authored Sep 16, 2019
  
  0717f04e
- Add function to split sumay files per barcodes · b5f1fcda
  a-slide authored Sep 16, 2019
  
  b5f1fcda
Aug 21, 2019
- Add Bam parsing ability · e7b09319
  a-slide authored Aug 21, 2019
  
  e7b09319
- Add option to filter duplicated read_ids · c10b8959
  a-slide authored Aug 21, 2019
  
  c10b8959