Commits · 07b4cb538780d6e3319386d634239b0d3f355cba · CCD-public / PycoQC

Jan 15, 2019
- Finish summary sequencing file implementation · 07b4cb53
  a-slide authored Jan 15, 2019
  
  07b4cb53
- Update package to work with manually generated sum seq files · 3dae929a
  a-slide authored Jan 14, 2019
  
  3dae929a
- Add ability to generate a sequencing summary file when not available · 790c8dc4
  a-slide authored Jan 11, 2019
  
  790c8dc4
- Update version number · fb7bc510
  a-slide authored Jan 08, 2019
  
  fb7bc510
Jan 04, 2019
- Add length over time plot · f3dc83fd
  a-slide authored Jan 04, 2019
  
  f3dc83fd
- raise exception or warn user is using very low number of reads · e891b5e8
  a-slide authored Jan 04, 2019
  
  e891b5e8
- Add Guppy test file and benchmark · 8d5fa36e
  a-slide authored Jan 04, 2019
  
  8d5fa36e
- Refactoring of downsampling and data preparation · 2cf12f17
  a-slide authored Jan 04, 2019
  
  2cf12f17
- sequencing_summary_file_sample can handle gzip output · e5255494
  a-slide authored Jan 04, 2019
  
  e5255494
- Update ignore rule · bd682620
  a-slide authored Jan 04, 2019
  
  bd682620
- add ignore rule · 350ab11e
  a-slide authored Dec 11, 2018
  
  350ab11e
- Change verbose level from 3,2,1 to 2,1,0 · 51d5b49e
  a-slide authored Nov 27, 2018
  
  51d5b49e
- Fix error in channel_activity when using a promethion flowcell · abef71a3
  a-slide authored Nov 27, 2018
  
  abef71a3
- Add N50 score and median to summary table · 852702bc
  a-slide authored Nov 27, 2018
  
  852702bc
- Added sha256 in html report and CSS fixes. Issue #23 · c0d28863
  Tommaso Leonardi authored Nov 23, 2018
  
  c0d28863
- Fixed links and menu. Issues #23 and #31 · 6a72d623
  Tommaso Leonardi authored Nov 23, 2018
  
  6a72d623
- Added sample name as CLI option. Issue #23 · 9ce2335b
  Tommaso Leonardi authored Nov 23, 2018
  
  9ce2335b
- start new dev branch · 5bdfb1d1
  a-slide authored Nov 20, 2018
  
  5bdfb1d1
Nov 14, 2018
- Update version number · dafb2ca0
  a-slide authored Nov 14, 2018
  
  dafb2ca0
- Minor CLI fix + readme update · 78938c74
  a-slide authored Nov 14, 2018
  
  78938c74
Nov 13, 2018
- Add example HTML reports · bf24ec96
  a-slide authored Nov 13, 2018
  
  bf24ec96
- Merge pull request #25 from a-slide/dev · 4f42d521
  Adrien Leger authored Nov 13, 2018
  4f42d521
- Correct typos · 8e14b9c0
  a-slide authored Nov 13, 2018
  
  8e14b9c0
- Fix arg not in namespace · 51ed3969
  a-slide authored Nov 13, 2018
  
  51ed3969
- Update pycoQC to generate plots wich first option on initial creation · 4cc9cbbe
  a-slide authored Nov 13, 2018
  
  4cc9cbbe
- Add cli instructions in readme · f69e4214
  a-slide authored Nov 13, 2018
  
  f69e4214
- Add a json example config file · 29119ed7
  a-slide authored Nov 13, 2018
  
  29119ed7
- Update common functions · d39a94ba
  a-slide authored Nov 13, 2018
  
  d39a94ba
- Comment and harmonize cli.py · 424d1631
  a-slide authored Nov 13, 2018
  
  424d1631
- Cleanup and update init · 1a4fe552
  a-slide authored Nov 13, 2018
  
  1a4fe552
- Update usage notebook · f26f348c
  a-slide authored Nov 13, 2018
  
  f26f348c
- Add a simple html index generated from a markdown document · ffd69f58
  a-slide authored Nov 13, 2018
  
  ffd69f58
- Generates 4 examples html reports · 84c6456b
  a-slide authored Nov 13, 2018
  
  84c6456b
Nov 09, 2018
- Merge pull request #22 from tleonardi/dev · 164d95c9
  Adrien Leger authored Nov 09, 2018
  164d95c9
Nov 08, 2018
- Merge branch 'cli' into dev · 237a5c46
  Tommaso Leonardi authored Nov 08, 2018
  
  237a5c46
- Fixed error in --min_pass_qual parsing · d1e13847
  Tommaso Leonardi authored Nov 08, 2018
  
  d1e13847
- Added jinja2 requirement · f1b20a2c
  Tommaso Leonardi authored Nov 08, 2018
  
  f1b20a2c
- Require plotly 3.4 due to a bug in 3.3 · 3cbf675f
  Tommaso Leonardi authored Nov 08, 2018
  
  3cbf675f
- Improved HTML template · d7318cb7
  Tommaso Leonardi authored Nov 08, 2018
  
  d7318cb7
- Add pypi version badge · 44324c05
  a-slide authored Nov 08, 2018
  
  44324c05