up: dorado, modkit, multiQC and pycoQC (duceppemo fork); fix: container definitions to reduce image size. (!4) · Merge requests · CCD-public / Nanopore

João Henrique Chrusciel requested to merge dev/containers into main May 03, 2025

removed miniconda and replaced installs with apt/pip installed samtools, bedtools via apt; pod5 and multiQC via pip used pip options: --no-cache-dir to reduce image size --break-system-packages to bypass debian PEP 668 issue fixed plotly version conflict between pycoQC and MultiQC: edited pycoQC's setup.py inside container using: sed -i 's/plotly==5.16.1/plotly==5.18.0/' setup.py

up: dorado, modkit, multiQC and pycoQC (duceppemo fork); fix: container definitions to reduce image size.

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