From 89dffd2f072da14b553ad1edc5d25ab5219c5a77 Mon Sep 17 00:00:00 2001
From: Nickyecen <nicolasecendron@gmail.com>
Date: Tue, 2 Sep 2025 17:58:38 -0300
Subject: [PATCH] Add check requested on #2

Signed-off-by: Nickyecen <nicolasecendron@gmail.com>
---
 src/modules/basecall.nf | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/src/modules/basecall.nf b/src/modules/basecall.nf
index a2cad7b..e60db1e 100755
--- a/src/modules/basecall.nf
+++ b/src/modules/basecall.nf
@@ -41,6 +41,11 @@ process BASECALL {
 
     script:
         """
+        if [[ "${basecall_trim}" != "none" && "${trimmed_barcodes}" == "False" ]]; then
+            echo "Error: basecall_trim has to be \"none\" for trimmed_barcodes to be \"False\""
+            exit
+        fi
+
         echo "Basecalling started for: ${id}"
         if [[ "${basecall_config}" == "None" ]]; then
             if [[ "${basecall_mods}" == "None" ]]; then
-- 
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