From 09ff8258461f3ad3fb40e6aa608923e1ca35c225 Mon Sep 17 00:00:00 2001
From: Bernardo Aguzzoli Heberle
 <81333350+bernardo-heberle@users.noreply.github.com>
Date: Thu, 11 Jan 2024 09:48:00 -0500
Subject: [PATCH] Update README.md

---
 README.md | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index 899e39c..c3c94d3 100755
--- a/README.md
+++ b/README.md
@@ -101,7 +101,7 @@ nextflow ../workflow/main.nf --basecall_path "../../data/test_data/" \
         --basecall_trim "none" \
         --basecall_compute "gpu" \
         --basecall_demux "False" \
-        --out_dir "test_basecall_gpu_no_demux_mouse"
+        --out_dir "test_basecall_gpu_no_demux_mouse" -resume
   ```
 
 ### GPU basecalling with demultiplexing
@@ -117,7 +117,7 @@ nextflow ../workflow/main.nf --basecall_path "../data/test_data/" \
         --basecall_compute "gpu" \
         --basecall_demux "True" \
         --trim_barcode "True" \
-        --out_dir "test_basecall_gpu_demux_mouse"
+        --out_dir "test_basecall_gpu_demux_mouse" -resume
 ```
 
 ## Pipeline output directory description:
-- 
GitLab